This database has been closed to new submissions.

The date of last curation was 07 June 2017 and the 'last update' on 04 August 2018 was a partial and uncurated update.

LOVD - Variant listings for PAX6

About this overview [Show]

Patient data (#0001530)
Patient ID Case 2
Disease Aniridia
Reference/Submitter [22393275], United Kingdom (Great Britain):Edinburgh
Template DNA
Technique SEQ
Remarks -
# Reported 1
Population Korean
Gender male
Sequence Inheritance -
Phenotype Inheritance Sporadic
Second PCR -
CIS -
Conserved residue -
Related Phenotype Aniridia, nystagmus, keratopathy, cataract
Unrelated  Phenotype -
Submitter Isabel Hanson

Variant data
Allele Unknown
Reported pathogenicity Pathogenic
Concluded pathogenicity Pathogenic
Exon 05
Location Exon
Legacy DNA ID c.381G>T
DNA change c.19G>T
RNA change -
Protein change p.(Gly7*)
RNA information Gly (gga) >Ter (tga) predicted
Protein information NMD predicted - protein synthesis unlikely
DB-ID PAX6_00638
Base number 19
5' Sequence Context CACAGC
Original Sequence G
Variant Sequence T
3' Sequence Context GAGTGA
Type Substitution
Domain PD
Detection Method Direct Sequencing
RE Site -
Frequency -
Remarks -

1 entry in PAX6

Path. Allele
Exon Descending
Ascending
Location Descending
Ascending
Legacy DNA ID Descending
Ascending
DNA change Descending
Ascending
RNA change Descending
Ascending
Protein change Descending
Ascending
RNA information Descending
Ascending
Protein information Descending
Ascending
DB-ID Descending
Ascending
Base number Descending
Ascending
5' Sequence Context Descending
Ascending
Original Sequence Descending
Ascending
Variant Sequence Descending
Ascending
3' Sequence Context Descending
Ascending
Type Descending
Ascending
Domain Descending
Ascending
Detection Method Descending
Ascending
RE Site Descending
Ascending
Frequency Descending
Ascending
Remarks Descending
Ascending
+/+ Unknown 05 Exon c.381G>T c.19G>T - p.(Gly7*) Gly (gga) >Ter (tga) predicted NMD predicted - protein synthesis unlikely PAX6_00638 19 CACAGC G T GAGTGA Substitution PD Direct Sequencing - - -