This database has been closed to new submissions.

The date of last curation was 07 June 2017 and the 'last update' on 04 August 2018 was a partial and uncurated update.

LOVD - Variant listings for PAX6

About this overview [Show]

Patient data (#0001821)
Patient ID 157
Disease Anridia
Reference/Submitter [26661695], United Kingdom (Great Britain):Edinburgh
Template DNA
Technique SEQ
Remarks -
# Reported 1
Population -
Gender female
Sequence Inheritance -
Phenotype Inheritance Sporadic
Second PCR -
CIS -
Conserved residue -
Related Phenotype Classical aniridia
Unrelated  Phenotype -
Submitter Isabel Hanson

Variant data
Allele Unknown
Reported pathogenicity Pathogenic
Concluded pathogenicity Pathogenic
Exon 05
Location Exon
Legacy DNA ID c.390C>T
DNA change c.28C>T
RNA change -
Protein change p.(Gln10*)
RNA information Early nonsense mutation - NMD of RNA predicted
Protein information Protein synthesis unlikely - NMD of RNA predicted
DB-ID PAX6_00781
Base number 28
5' Sequence Context GTGAAT
Original Sequence C
Variant Sequence T
3' Sequence Context AGCTCG
Type Substitution
Domain PD
Detection Method Direct Sequencing
RE Site -
Frequency -
Remarks -

1 entry in PAX6

Path. Allele
Exon Descending
Ascending
Location Descending
Ascending
Legacy DNA ID Descending
Ascending
DNA change Descending
Ascending
RNA change Descending
Ascending
Protein change Descending
Ascending
RNA information Descending
Ascending
Protein information Descending
Ascending
DB-ID Descending
Ascending
Base number Descending
Ascending
5' Sequence Context Descending
Ascending
Original Sequence Descending
Ascending
Variant Sequence Descending
Ascending
3' Sequence Context Descending
Ascending
Type Descending
Ascending
Domain Descending
Ascending
Detection Method Descending
Ascending
RE Site Descending
Ascending
Frequency Descending
Ascending
Remarks Descending
Ascending
+/+ Unknown 05 Exon c.390C>T c.28C>T - p.(Gln10*) Early nonsense mutation - NMD of RNA predicted Protein synthesis unlikely - NMD of RNA predicted PAX6_00781 28 GTGAAT C T AGCTCG Substitution PD Direct Sequencing - - -