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LOVD - Variant listings for SOX2

About this overview [Show]

Patient data (#0000859)
Patient ID Case 1
Disease Anophthalmia-esophageal-genital syndrome
Reference/Submitter [16543359], United Kingdom (Great Britain):Edinburgh
Template DNA
Technique FISH
Remarks Case first described by Rogers (1988) Proceedings of the Greenwood Genetic Center, 7, 57
# Reported 1
Population -
Gender female
Sequence Inheritance Sporadic
Phenotype Inheritance Sporadic
Second PCR -
CIS -
Conserved residue -
Related Phenotype Bilateral anophthalmia, oesophageal atresia, tracheo-oesophageal fistula
Unrelated  Phenotype -
Submitter Isabel Hanson

Variant data
Allele -
Reported pathogenicity Pathogenic
Concluded pathogenicity Pathogenic
Exon 01
Legacy DNA ID -
DNA change Whole gene deletion
RNA change r.0
Protein change p.0
RNA information No transcription
Protein information No translation
DB-ID SOX2_00013
Location Whole Gene
Base number -
5' Sequence Context -
Original Sequence -
Variant Sequence -
3' Sequence Context -
Type Deletion
Domain -
Detection Method FISH
RE Site -
Frequency -
Remarks Patient has a 2.7Mb deletion (encompassing the whole SOX2 gene) and a t(3;7) translocation

1 entry in SOX2

Path. Allele
Exon Descending
Ascending
Legacy DNA ID Descending
Ascending
DNA change Descending
Ascending
RNA change Descending
Ascending
Protein change Descending
Ascending
RNA information Descending
Ascending
Protein information Descending
Ascending
DB-ID Descending
Ascending
Location Descending
Ascending
Base number Descending
Ascending
5' Sequence Context Descending
Ascending
Original Sequence Descending
Ascending
Variant Sequence Descending
Ascending
3' Sequence Context Descending
Ascending
Type Descending
Ascending
Domain Descending
Ascending
Detection Method Descending
Ascending
RE Site Descending
Ascending
Frequency Descending
Ascending
Remarks Descending
Ascending
+/+ - 01 - Whole gene deletion r.0 p.0 No transcription No translation SOX2_00013 Whole Gene - - - - - Deletion - FISH - - Patient has a 2.7Mb deletion (encompassing the whole SOX2 gene) and a t(3;7) translocation