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LOVD - Variant listings for SOX2

About this overview [Show]

Patient data (#0001684)
Patient ID Chassaing 2014 Patient 9
Disease Anophthalmia syndrome
Reference/Submitter [24033328], United Kingdom (Great Britain):Edinburgh
Template DNA
Technique SEQ
Remarks Mutation occurred de novo
# Reported 1
Population -
Gender male
Sequence Inheritance Sporadic
Phenotype Inheritance Sporadic
Second PCR -
CIS -
Conserved residue -
Related Phenotype Pregnancy terminated at 23 weeks following detection of bilateral anophthalmia and ventriculomegaly. Atresia of the aqueduct of Sylvius also detected upon autopsy. Subtle dysmorphic features.
Unrelated  Phenotype -
Submitter Isabel Hanson

Variant data
Allele Unknown
Reported pathogenicity Pathogenic
Concluded pathogenicity Pathogenic
Exon 01
Legacy DNA ID -
DNA change c.158_174delinsATG
RNA change -
Protein change p.(Arg53Hisfs*37)
RNA information Frame-shifting indel predicted
Protein information PTC predicted
DB-ID SOX2_00091
Location ORF exon
Base number 158
5' Sequence Context GGTCCC
Original Sequence GCGGGCAGCGGCGCAAG
Variant Sequence ATG
3' Sequence Context ATGGCC
Type Insertion/Deletion
Domain HMG
Detection Method Direct Sequencing
RE Site -
Frequency -
Remarks -

1 entry in SOX2

Path. Allele
Exon Descending
Ascending
Legacy DNA ID Descending
Ascending
DNA change Descending
Ascending
RNA change Descending
Ascending
Protein change Descending
Ascending
RNA information Descending
Ascending
Protein information Descending
Ascending
DB-ID Descending
Ascending
Location Descending
Ascending
Base number Descending
Ascending
5' Sequence Context Descending
Ascending
Original Sequence Descending
Ascending
Variant Sequence Descending
Ascending
3' Sequence Context Descending
Ascending
Type Descending
Ascending
Domain Descending
Ascending
Detection Method Descending
Ascending
RE Site Descending
Ascending
Frequency Descending
Ascending
Remarks Descending
Ascending
+/+ Unknown 01 - c.158_174delinsATG - p.(Arg53Hisfs*37) Frame-shifting indel predicted PTC predicted SOX2_00091 ORF exon 158 GGTCCC GCGGGCAGCGGCGCAAG ATG ATGGCC Insertion/Deletion HMG Direct Sequencing - - -